Name | License | Citation | Comments |
---|---|---|---|
ANM | free | [1] | computes and visualizes normal modes |
Ascalaph Graphics | free | visualizes MDynaMix simulations | |
Database of Macromolecular Movements | free | [2] | analyzes protein hinge motions |
DSMM | free | [3] | movies of MD simulations |
Dynameomics | free | [4] | interactive visualization of MD trajectories |
FIRST/FRODA | free | [5] | uses constraints to generate conformational ensembles and trajectories |
Force Field Explorer | free | graphical interface to TINKER | |
MoDEL | free | deposit and access MD trajectories | |
Moviemaker | free | [6] | generates animations of protein motions |
NOMAD-ref | free | [7] | compute and visualizes normal modes |
Yale Morph Server | free | [2] | animations transitions between two states |